Transcript: ENST00000376834.3 C9orf41-001

Description

chromosome 9 open reading frame 41 [Source:HGNC Symbol;Acc:23435]

Gene Synonyms

FLJ25795

Location

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 19941 variant alleles and maps to 464 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376834.3	C9orf41-001	4130	409aa	ENSP00000366030.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6649	B4DSD4 Q8N4J0	NM_152420.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376830.3	C9orf41-003	1012	153aa	ENSP00000366026.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T8U9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376837.3	C9orf41-201	1010	196aa	ENSP00000366033.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DSD4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451153.1	C9orf41-002	715	238aa	ENSP00000396353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T8V1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,130 bps, Translation length: 409 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N4J0

CCDS

This transcript is a member of the Human CCDS set: CCDS6649

Version

ENST00000376834.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000052703 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.