Transcript: ENST00000586489.1 INO80C-009

Description

INO80 complex subunit C [Source:HGNC Symbol;Acc:26994]

Gene Synonyms

C18orf37, FLJ38183, IES6, hIes6

Location

Chromosome 18: 33,048,548-33,077,613 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 11615 variant alleles and maps to 164 oligo probes.

Gene

This transcript is a product of gene ENSG00000153391.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441607.2	INO80C-002	904	228aa	ENSP00000391457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45853	K7EIY8 K7EKI6 Q6PI98	NM_001098817.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592173.1	INO80C-003	3245	197aa	ENSP00000465273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKI6 Q6PI98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334598.7	INO80C-001	974	192aa	ENSP00000334473.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11914	K7EIY8 K7EKI6 Q6PI98	NM_194281.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590757.1	INO80C-008	595	95aa	ENSP00000467708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQ79	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586489.1	INO80C-009	594	137aa	ENSP00000464948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIY8 K7EKI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591139.1	INO80C-011	408	136aa	ENSP00000473165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKI6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000587450.1	INO80C-005	382	98aa	ENSP00000467013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENM4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589273.1	INO80C-010	299	29aa	ENSP00000465637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKI6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586449.1	INO80C-007	898	89aa	ENSP00000466269.1	Nonsense mediated decay		K7ELX9	-	-
ENST00000283410.4	INO80C-004	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585971.1	INO80C-014	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589053.1	INO80C-006	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 594 bps, Translation length: 137 residues

Version

ENST00000586489.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442847 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000586489.1 INO80C-009

Summary