Transcript: ENST00000551219.1 PTPRR-006

Description

protein tyrosine phosphatase, receptor type, R [Source:HGNC Symbol;Acc:9680]

Gene Synonyms

EC-PTP, ECPTP, PCPTP1, PTP-SL, PTPBR7, PTPRQ

Location

Chromosome 12: 71,031,859-71,148,371 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 11 domains and features, is associated with 48797 variant alleles and maps to 682 oligo probes.

Gene

This transcript is a product of gene ENSG00000153233.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283228.2	PTPRR-001	3529	657aa	ENSP00000283228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8998	F8VVE9 Q15256 Q68CP6	NM_002849.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440835.2	PTPRR-005	2818	412aa	ENSP00000391750.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44945	F8VVE9 Q15256 Q68CP6	NM_130846.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378778.1	PTPRR-201	2458	451aa	ENSP00000368054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55847	F8VVE9 Q15256 Q68CP6	NM_001207016.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342084.4	PTPRR-002	2037	545aa	ENSP00000339605.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55848	F8VVE9 Q15256 Q68CP6	NM_001207015.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549308.1	PTPRR-004	1603	412aa	ENSP00000446943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44945	F8VVE9 Q15256 Q68CP6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550661.1	PTPRR-009	1024	198aa	ENSP00000449616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVE9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551219.1	PTPRR-006	2966	141aa	ENSP00000448049.1	Nonsense mediated decay		F8VU63	-	-
ENST00000537619.2	PTPRR-007	1927	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547752.1	PTPRR-008	1729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548220.1	PTPRR-003	1374	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549107.1	PTPRR-010	862	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 4, Transcript length: 2,966 bps, Translation length: 141 residues

Version

ENST00000551219.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404483 (version 1)

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Transcript: ENST00000551219.1 PTPRR-006

Summary