Transcript: ENST00000282260.6 HOMER1-003

Description

homer homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:17512]

Gene Synonyms

HOMER, HOMER-1B, HOMER1A, HOMER1B, HOMER1C, SYN47, Ves-1

Location

Chromosome 5: 78,671,753-78,808,617 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 58565 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSG00000152413.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334082.6	HOMER1-001	5881	354aa	ENSP00000334382.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43335	Q86YM7	NM_004272.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508576.1	HOMER1-004	815	177aa	ENSP00000426651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64189	Q86YM7	NM_001277078.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282260.6	HOMER1-003	774	224aa	ENSP00000282260.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64188	Q86YM7	NM_001277077.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535690.1	HOMER1-201	642	180aa	ENSP00000441587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86YM6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460741.1	HOMER1-002	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 774 bps, Translation length: 224 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YM7

CCDS

This transcript is a member of the Human CCDS set: CCDS64188

Version

ENST00000282260.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000258858 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000282260.6 HOMER1-003

Summary