Transcript: ENST00000282041.5 EPG5-001

Description

ectopic P-granules autophagy protein 5 homolog (C. elegans) [Source:HGNC Symbol;Acc:29331]

Gene Synonyms

HEEW1, KIAA1632, VICIS, hEPG5

Location

Chromosome 18: 43,427,574-43,547,240 reverse strand.

About this transcript

This transcript has 44 exons, is annotated with 11 domains and features, is associated with 49870 variant alleles and maps to 1387 oligo probes.

Gene

This transcript is a product of gene ENSG00000152223.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282041.5	EPG5-001	12633	2579aa	ENSP00000282041.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11926	Q9BTI0 Q9BYJ3 Q9HCE0	NM_020964.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590854.1	EPG5-009	6375	505aa	ENSP00000467066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BYJ3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587884.1	EPG5-006	4232	336aa	ENSP00000466990.1	Nonsense mediated decay		K7ENK5	-	-
ENST00000592272.1	EPG5-004	3999	856aa	ENSP00000467464.1	Nonsense mediated decay		K7EPN4	-	-
ENST00000590884.1	EPG5-005	3767	657aa	ENSP00000466403.1	Nonsense mediated decay		K7EM87	-	-
ENST00000585906.1	EPG5-002	4348	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587262.1	EPG5-008	637	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586655.1	EPG5-007	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587973.1	EPG5-010	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587974.1	EPG5-003	4457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 12,633 bps, Translation length: 2,579 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HCE0

CCDS

This transcript is a member of the Human CCDS set: CCDS11926

Version

ENST00000282041.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000445081 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000282041.5 EPG5-001

Summary