Transcript: ENST00000489442.1 CCL28-001

Description

chemokine (C-C motif) ligand 28 [Source:HGNC Symbol;Acc:17700]

Gene Synonyms

CCK1, MEC, SCYA28

Location

Chromosome 5: 43,376,747-43,412,477 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 14664 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSG00000151882.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361115.4	CCL28-002	3126	127aa	ENSP00000354416.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3944	A0N0Q3 D6RC73 Q9NRJ3	NM_148672.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513525.1	CCL28-003	1518	80aa	ENSP00000422369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC73	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537013.1	CCL28-201	354	117aa	ENSP00000443823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NRJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489442.1	CCL28-001	1342	127aa	ENSP00000426424.1	Nonsense mediated decay	CCDS3944	A0N0Q3 D6RC73 Q9NRJ3	-	-
ENST00000514421.1	CCL28-004	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,342 bps, Translation length: 127 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NRJ3

CCDS

This transcript is a member of the Human CCDS set: CCDS3944

Version

ENST00000489442.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000211630 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000489442.1 CCL28-001

Summary