Transcript: ENST00000280701.3 OXSM-001

Description

3-oxoacyl-ACP synthase, mitochondrial [Source:HGNC Symbol;Acc:26063]

Gene Synonyms

FASN2D, FLJ20604, KASI, KS

Location

Chromosome 3: 25,831,571-25,836,025 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 2176 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSG00000151093.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000280701.3	OXSM-001	1519	459aa	ENSP00000280701.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2643	B4E3Q7 C9J2G3 C9JQQ2 Q9NWU1	NM_017897.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420173.2	OXSM-003	1256	376aa	ENSP00000411303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46780	C9J2G3 Q9NWU1	NM_001145391.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452098.1	OXSM-004	899	220aa	ENSP00000392334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2G3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428266.1	OXSM-007	756	231aa	ENSP00000409817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2G3 C9JQQ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448177.1	OXSM-002	1044	102aa	ENSP00000404115.1	Nonsense mediated decay		F8VNS3	-	-
ENST00000449808.1	OXSM-008	735	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464688.1	OXSM-005	462	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460195.1	OXSM-006	410	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,519 bps, Translation length: 459 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NWU1

CCDS

This transcript is a member of the Human CCDS set: CCDS2643

Version

ENST00000280701.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs9851096, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-LWK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252876 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000280701.3 OXSM-001

Summary