Transcript: ENST00000280612.5 SLC7A11-001

Description

solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 [Source:HGNC Symbol;Acc:11059]

Gene Synonyms

CCBR1, xCT

Location

About this transcript

This transcript has 12 exons, is annotated with 18 domains and features, is associated with 32063 variant alleles and maps to 654 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000280612.5	SLC7A11-001	9645	501aa	ENSP00000280612.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3742	Q4W5A5 Q9P1X0 Q9UPY5	NM_014331.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509248.1	SLC7A11-002	797	75aa	ENSP00000424046.1	Nonsense mediated decay		H0Y9F9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 9,645 bps, Translation length: 501 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPY5

CCDS

This transcript is a member of the Human CCDS set: CCDS3742

Version

ENST00000280612.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257251 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.