Transcript: ENST00000534225.1 IL18-002

Description

interleukin 18 (interferon-gamma-inducing factor) [Source:HGNC Symbol;Acc:5986]

Gene Synonyms

IGIF, IL-18, IL-1g, IL1F4

Location

Chromosome 11: 112,023,722-112,034,816 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 4077 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000150782.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000280357.7	IL18-001	1147	193aa	ENSP00000280357.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44731	Q14116 Q9NQ49	NM_001562.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524595.1	IL18-003	1090	189aa	ENSP00000434561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58180	Q14116 Q9NQ49	NM_001243211.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528832.1	IL18-006	795	193aa	ENSP00000434161.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44731	Q14116 Q9NQ49	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533858.1	IL18-005	758	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525547.1	IL18-004	1697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534225.1	IL18-002	880	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 880 bps,

Version

ENST00000534225.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000392414 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000534225.1 IL18-002

Summary