Transcript: ENST00000299855.5 MMP3-001

Description

matrix metallopeptidase 3 (stromelysin 1, progelatinase) [Source:HGNC Symbol;Acc:7173]

Gene Synonyms

CHDS6, MMP-3, SL-1, STMY, STMY1, STR1

Location

About this transcript

This transcript has 10 exons, is annotated with 33 domains and features, is associated with 4084 variant alleles and maps to 518 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299855.5	MMP3-001	2016	477aa	ENSP00000299855.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8323	P08254	NM_002422.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434103.1	MMP3-002	296	99aa	ENSP00000398346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000524478.1	MMP3-003	559	42aa	ENSP00000435255.1	Nonsense mediated decay		E9PKX2	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,016 bps, Translation length: 477 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P08254

CCDS

This transcript is a member of the Human CCDS set: CCDS8323

Version

ENST00000299855.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000109758 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.