Transcript: ENST00000533943.1 MRPL49-005

Description

mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:1176]

Gene Synonyms

C11orf4, L49mt, MRP-L49, NOF, NOF1

Location

Chromosome 11: 64,889,827-64,893,650 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 1865 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSG00000149792.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000279242.2	MRPL49-001	2019	166aa	ENSP00000279242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8096	Q13405	NM_004927.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533943.1	MRPL49-005	688	127aa	ENSP00000434052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000534078.1	MRPL49-008	518	56aa	ENSP00000434222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PRD2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526171.1	MRPL49-006	501	140aa	ENSP00000437177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNF1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531705.1	MRPL49-009	489	99aa	ENSP00000436740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PI78	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526319.1	MRPL49-004	1906	166aa	ENSP00000434190.1	Nonsense mediated decay	CCDS8096	Q13405	-	-
ENST00000524482.1	MRPL49-002	2065	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528529.1	MRPL49-007	752	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532671.1	MRPL49-003	2526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 688 bps, Translation length: 127 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000533943.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000385295 (version 1)

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Transcript: ENST00000533943.1 MRPL49-005

Summary