Transcript: ENST00000524711.1 EIF3M-005

Description

eukaryotic translation initiation factor 3, subunit M [Source:HGNC Symbol;Acc:24460]

Gene Synonyms

B5, FLJ29030, GA17, HFLB5, PCID1, TANGO7, eIF3m, hfl-B5

Location

Chromosome 11: 32,605,394-32,622,339 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 7269 variant alleles and maps to 384 oligo probes.

Gene

This transcript is a product of gene ENSG00000149100.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000531120.1	EIF3M-001	5051	374aa	ENSP00000436049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7880	E9PN86 J3KNJ2 Q7L2H7	NM_006360.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524896.1	EIF3M-002	1207	242aa	ENSP00000436787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2Q4 E9PRY0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323213.5	EIF3M-007	889	191aa	ENSP00000319910.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN86 J3KNJ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533439.1	EIF3M-011	749	102aa	ENSP00000432891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN86	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526267.1	EIF3M-013	662	220aa	ENSP00000432139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YCQ8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000525782.1	EIF3M-004	2236	74aa	ENSP00000434080.1	Nonsense mediated decay		E9PRY0	-	-
ENST00000531921.1	EIF3M-003	1697	123aa	ENSP00000435501.1	Nonsense mediated decay		E7ESM3	-	-
ENST00000524711.1	EIF3M-005	1645	59aa	ENSP00000432286.1	Nonsense mediated decay		E9PRI2	-	-
ENST00000532444.1	EIF3M-009	636	30aa	ENSP00000435834.1	Nonsense mediated decay		E9PSB3	-	-
ENST00000532054.1	EIF3M-006	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530026.1	EIF3M-010	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525054.1	EIF3M-012	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531186.1	EIF3M-008	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 1,645 bps, Translation length: 59 residues

Version

ENST00000524711.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388766 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000524711.1 EIF3M-005

Summary