Transcript: ENST00000519293.1 MTDH-004

Description

metadherin [Source:HGNC Symbol;Acc:29608]

Gene Synonyms

3D3, AEG-1, AEG1, LYRIC, LYRIC/3D3

Location

Chromosome 8: 98,703,247-98,736,880 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 15500 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSG00000147649.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336273.3	MTDH-001	6177	582aa	ENSP00000338235.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6274	Q86UE4	NM_178812.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519934.1	MTDH-002	2184	526aa	ENSP00000428168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJU9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522313.1	MTDH-003	672	224aa	ENSP00000428703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000521933.1	MTDH-006	565	188aa	ENSP00000429642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBJ8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000519293.1	MTDH-004	629	60aa	ENSP00000429289.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522104.1	MTDH-005	486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 629 bps, Translation length: 60 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000519293.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000380012 (version 1)

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Transcript: ENST00000519293.1 MTDH-004

Summary