Transcript: ENST00000534622.1 CHRNA6-004

Description

cholinergic receptor, nicotinic, alpha 6 (neuronal) [Source:HGNC Symbol;Acc:15963]

Gene Synonyms

CHNRA6

Location

Chromosome 8: 42,608,070-42,623,753 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 24 domains and features, is associated with 7322 variant alleles and maps to 293 oligo probes.

Gene

This transcript is a product of gene ENSG00000147434.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000276410.2	CHRNA6-001	2400	494aa	ENSP00000276410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6135	E9PP97 Q15825	NM_004198.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534622.1	CHRNA6-004	1872	479aa	ENSP00000433871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56536	Q15825	NM_001199279.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533810.1	CHRNA6-005	551	111aa	ENSP00000434659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530869.1	CHRNA6-003	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529467.1	CHRNA6-002	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,872 bps, Translation length: 479 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15825

CCDS

This transcript is a member of the Human CCDS set: CCDS56536

Version

ENST00000534622.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000383157 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000534622.1 CHRNA6-004

Summary