Transcript: ENST00000533810.1 CHRNA6-005

Description

cholinergic receptor, nicotinic, alpha 6 (neuronal) [Source:HGNC Symbol;Acc:15963]

Gene Synonyms

CHNRA6

Location

Chromosome 8: 42,611,772-42,651,535 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 18019 variant alleles and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSG00000147434.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000276410.2	CHRNA6-001	2400	494aa	ENSP00000276410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6135	E9PP97 Q15825	NM_004198.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534622.1	CHRNA6-004	1872	479aa	ENSP00000433871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56536	Q15825	NM_001199279.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533810.1	CHRNA6-005	551	111aa	ENSP00000434659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530869.1	CHRNA6-003	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529467.1	CHRNA6-002	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 551 bps, Translation length: 111 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000533810.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000383158 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000533810.1 CHRNA6-005

Summary