Transcript: ENST00000476700.1 AGBL3-003

Description

ATP/GTP binding protein-like 3 [Source:HGNC Symbol;Acc:27981]

Gene Synonyms

CCP3, MGC32955

Location

Chromosome 7: 134,671,299-134,697,262 forward strand.

About this transcript

This transcript has 5 exons, is associated with 9948 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000146856.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436302.2	AGBL3-007	3533	920aa	ENSP00000388275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47718	Q8NEM8	NM_178563.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458078.1	AGBL3-202	3767	975aa	ENSP00000395969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQE2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435976.2	AGBL3-006	2495	704aa	ENSP00000401220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7R4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359383.3	AGBL3-201	787	177aa	ENSP00000352343.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JL97	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455283.2	AGBL3-008	497	93aa	ENSP00000412700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6Y5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000275763.6	AGBL3-001	2973	621aa	ENSP00000275763.6	Nonsense mediated decay		Q8NEM8	-	-
ENST00000494702.2	AGBL3-005	856	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476700.1	AGBL3-003	2979	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470839.1	AGBL3-004	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,979 bps,

Version

ENST00000476700.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339932 (version 1)

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Transcript: ENST00000476700.1 AGBL3-003

Summary