Transcript: ENST00000454853.2 GABRR1-001

Description

gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:HGNC Symbol;Acc:4090]

Location

About this transcript

This transcript has 10 exons, is annotated with 33 domains and features, is associated with 16978 variant alleles and maps to 504 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454853.2	GABRR1-001	2820	479aa	ENSP00000412673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5019	P24046	NM_002042.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435811.1	GABRR1-201	3110	462aa	ENSP00000394687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59029	P24046	NM_001256703.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369451.3	GABRR1-003	1823	392aa	ENSP00000358463.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59028	P24046	NM_001267582.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457434.1	GABRR1-002	1994	45aa	ENSP00000410130.1	Nonsense mediated decay		F8WB88	-	-
ENST00000481493.1	GABRR1-004	335	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,820 bps, Translation length: 479 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P24046

CCDS

This transcript is a member of the Human CCDS set: CCDS5019

Version

ENST00000454853.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041479 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.