Transcript: ENST00000518888.1 GABRA6-006

Description

gamma-aminobutyric acid (GABA) A receptor, alpha 6 [Source:HGNC Symbol;Acc:4080]

Location

Chromosome 5: 161,058,736-161,112,977 forward strand.

About this transcript

This transcript has 4 exons, is associated with 24882 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000145863.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274545.5	GABRA6-001	2128	453aa	ENSP00000274545.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4356	Q16445 Q71UU0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523217.1	GABRA6-003	2393	443aa	ENSP00000430527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV53 Q71UU0	NM_000811.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520000.1	GABRA6-007	591	197aa	ENSP00000429943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000523691.1	GABRA6-009	573	191aa	ENSP00000427989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAS3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000517823.1	GABRA6-008	555	185aa	ENSP00000430212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBS7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000522269.1	GABRA6-005	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518888.1	GABRA6-006	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521520.1	GABRA6-002	2175	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524220.1	GABRA6-004	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 565 bps,

Version

ENST00000518888.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000374413 (version 1)

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Transcript: ENST00000518888.1 GABRA6-006

Summary