Transcript: ENST00000432877.1 RQCD1-004

Description

RCD1 required for cell differentiation1 homolog (S. pombe) [Source:HGNC Symbol;Acc:10445]

Gene Synonyms

CNOT9, CT129, RCD-1, RCD1, RCD1+

Location

Chromosome 2: 219,433,582-219,449,379 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 7148 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSG00000144580.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273064.6	RQCD1-001	4079	299aa	ENSP00000273064.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33379	B4DJE1 D5MQE1 Q92600	NM_005444.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542068.1	RQCD1-202	3259	299aa	ENSP00000443687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33379	B4DJE1 D5MQE1 Q92600	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509807.2	RQCD1-201	1621	331aa	ENSP00000441357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63122	B4DJE1 B7Z1E5	NM_001271634.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295701.5	RQCD1-002	1129	258aa	ENSP00000295701.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63123	B5MDQ4	NM_001271635.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418808.1	RQCD1-007	907	61aa	ENSP00000396938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0W0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432877.1	RQCD1-004	581	75aa	ENSP00000392394.1	Nonsense mediated decay		F8WBZ6	-	-
ENST00000433439.1	RQCD1-003	567	41aa	ENSP00000415607.1	Nonsense mediated decay		F8WCV7	-	-
ENST00000489687.1	RQCD1-005	288	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473626.1	RQCD1-006	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 581 bps, Translation length: 75 residues

Version

ENST00000432877.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336923 (version 1)

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Transcript: ENST00000432877.1 RQCD1-004

Summary