Transcript: ENST00000420679.1 SPOPL-002

Description

speckle-type POZ protein-like [Source:HGNC Symbol;Acc:27934]

Gene Synonyms

BTBD33

Location

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 8635 variant alleles and maps to 364 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000280098.4	SPOPL-001	6025	392aa	ENSP00000280098.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33298	B4DEY7 Q6IQ16	NM_001001664.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420679.1	SPOPL-002	1386	190aa	ENSP00000396006.1	Nonsense mediated decay		F8WD02	-	-
ENST00000430968.1	SPOPL-003	558	72aa	ENSP00000410201.1	Nonsense mediated decay		F8WBB7	-	-
ENST00000467775.1	SPOPL-004	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 5, Transcript length: 1,386 bps, Translation length: 190 residues

Version

ENST00000420679.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331898 (version 1)