Transcript: ENST00000272317.6 RPS27A-001

Description

ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Gene Synonyms

CEP80, HEL112, S27A, UBA80, UBC, UBCEP1, UBCEP80, Uba80

Location

Chromosome 2: 55,459,538-55,462,989 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 2182 variant alleles and maps to 626 oligo probes.

Gene

This transcript is a product of gene ENSG00000143947.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000272317.6	RPS27A-001	1071	156aa	ENSP00000272317.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33202	A8CGI2 B2RDW1 F5GZ39 J3QSA3 J3QTR3 M0R1V7 P62979 Q8WYN9	NM_002954.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404735.1	RPS27A-002	796	156aa	ENSP00000385659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33202	A8CGI2 B2RDW1 F5GZ39 J3QSA3 J3QTR3 M0R1V7 P62979 Q8WYN9	NM_001177413.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402285.3	RPS27A-003	705	156aa	ENSP00000383981.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33202	A8CGI2 B2RDW1 F5GZ39 J3QSA3 J3QTR3 M0R1V7 P62979 Q8WYN9	NM_001135592.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449323.1	RPS27A-004	422	106aa	ENSP00000408482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8CGI2 F5GZ39 J3QSA3 J3QTR3 M0R1V7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495843.1	RPS27A-005	1159	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468810.1	RPS27A-010	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463185.1	RPS27A-007	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478196.2	RPS27A-008	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471772.2	RPS27A-009	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494756.1	RPS27A-012	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,071 bps, Translation length: 156 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62979

CCDS

This transcript is a member of the Human CCDS set: CCDS33202

Version

ENST00000272317.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000324423 (version 15)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000272317.6 RPS27A-001

Summary