Transcript: ENST00000368408.3 EFNA3-001

Description

ephrin-A3 [Source:HGNC Symbol;Acc:3223]

Gene Synonyms

EFL2, EPLG3, Ehk1-L, LERK3

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 4342 variant alleles and maps to 518 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368408.3	EFNA3-001	1782	238aa	ENSP00000357393.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1090	P52797	NM_004952.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556931.1	EFNA3-202	1037	233aa	ENSP00000450814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXG7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418360.2	EFNA3-201	1035	212aa	ENSP00000391370.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAD3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498667.1	EFNA3-002	776	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470294.1	EFNA3-003	763	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,782 bps, Translation length: 238 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52797

CCDS

This transcript is a member of the Human CCDS set: CCDS1090

Version

ENST00000368408.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000085429 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.