Transcript: ENST00000352967.4 TAF1A-001

Description

TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa [Source:HGNC Symbol;Acc:11532]

Gene Synonyms

MGC:17061, RAFI48, SL1, TAFI48

Location

Chromosome 1: 222,731,650-222,763,255 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features, is associated with 12423 variant alleles and maps to 640 oligo probes.

Gene

This transcript is a product of gene ENSG00000143498.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000350027.4	TAF1A-201	1911	450aa	ENSP00000339976.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1531	Q15573	NM_001201536.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352967.4	TAF1A-001	1894	450aa	ENSP00000327072.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1531	Q15573	NM_005681.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391882.1	TAF1A-202	1708	336aa	ENSP00000375754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1532	Q15573	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366890.1	TAF1A-002	1648	336aa	ENSP00000355856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1532	Q15573	NM_139352.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543857.1	TAF1A-203	1235	311aa	ENSP00000437725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DS21	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391883.2	TAF1A-005	894	286aa	ENSP00000375755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRA7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465263.1	TAF1A-003	1047	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487009.1	TAF1A-004	959	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480065.1	TAF1A-006	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,894 bps, Translation length: 450 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15573

CCDS

This transcript is a member of the Human CCDS set: CCDS1531

Version

ENST00000352967.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000091493 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000352967.4 TAF1A-001

Summary