Transcript: ENST00000308769.8 RFWD2-010

Description

ring finger and WD repeat domain 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17440]

Gene Synonyms

COP1, FLJ10416, RNF200

Location

Chromosome 1: 175,914,289-176,176,114 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 28 domains and features, is associated with 118406 variant alleles and maps to 548 oligo probes.

Gene

This transcript is a product of gene ENSG00000143207.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367669.3	RFWD2-001	3033	731aa	ENSP00000356641.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30944	B3KM72 Q8NHY2	NM_022457.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308769.8	RFWD2-010	2124	707aa	ENSP00000310943.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44279	B3KM72 Q8NHY2	NM_001001740.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367666.1	RFWD2-003	2022	566aa	ENSP00000356638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KM72 H0Y339	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000459744.1	RFWD2-008	741	247aa	ENSP00000437212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000498306.1	RFWD2-009	617	189aa	ENSP00000433810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJB5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000367667.1	RFWD2-002	2034	113aa	ENSP00000356639.1	Nonsense mediated decay		-	NM_001286644.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474194.1	RFWD2-006	975	157aa	ENSP00000433517.1	Nonsense mediated decay		E9PKI0	-	-
ENST00000491600.1	RFWD2-007	773	68aa	ENSP00000437275.1	Nonsense mediated decay		E9PMW8	-	-
ENST00000461830.2	RFWD2-004	2131	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482305.1	RFWD2-005	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,124 bps, Translation length: 707 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NHY2

CCDS

This transcript is a member of the Human CCDS set: CCDS44279

Version

ENST00000308769.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393314 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000308769.8 RFWD2-010

Summary