Transcript: ENST00000481236.1 ITGA10-003

Description

integrin, alpha 10 [Source:HGNC Symbol;Acc:6135]

Gene Synonyms

PRO827

Location

Chromosome 1: 145,530,952-145,532,622 forward strand.

About this transcript

This transcript has 2 exons, is associated with 953 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSG00000143127.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369304.3	ITGA10-001	5269	1167aa	ENSP00000358310.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS918	O75578	NM_003637.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538811.1	ITGA10-201	3479	1036aa	ENSP00000440011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539363.1	ITGA10-202	3380	1024aa	ENSP00000439894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2RTV5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481236.1	ITGA10-003	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468261.1	ITGA10-002	1438	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 583 bps,

Version

ENST00000481236.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000100717 (version 1)

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Transcript: ENST00000481236.1 ITGA10-003

Summary