Transcript: ENST00000464439.2 CYP4B1-007

Description

cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]

Gene Synonyms

CYPIVB1, P-450HP

Location

Chromosome 1: 47,264,736-47,285,021 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 8 domains and features, is associated with 9648 variant alleles and maps to 530 oligo probes.

Gene

This transcript is a product of gene ENSG00000142973.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371923.4	CYP4B1-002	2110	512aa	ENSP00000360991.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41328	E7EME6 F5H1Q8 P13584	NM_001099772.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000271153.4	CYP4B1-001	2171	511aa	ENSP00000271153.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS542	B4DV41 F5H6F1 P13584	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371919.4	CYP4B1-003	1494	497aa	ENSP00000360987.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EME6 F5H1Q8 Q8IZB0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452782.2	CYP4B1-011	1312	349aa	ENSP00000400413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EME6 F5H1Q8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468637.3	CYP4B1-005	919	238aa	ENSP00000437670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DV41 F5H6F1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526297.1	CYP4B1-010	561	70aa	ENSP00000438995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1Q8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464439.2	CYP4B1-007	2019	325aa	ENSP00000433068.1	Nonsense mediated decay		E9PML0	-	-
ENST00000529715.1	CYP4B1-009	1375	138aa	ENSP00000443212.1	Nonsense mediated decay		F5H5Q6	-	-
ENST00000534708.2	CYP4B1-008	1289	87aa	ENSP00000433367.2	Nonsense mediated decay		E9PL36	-	-
ENST00000546128.1	CYP4B1-012	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000413093.2	CYP4B1-013	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497005.1	CYP4B1-004	519	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481248.1	CYP4B1-006	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 2,019 bps, Translation length: 325 residues

Version

ENST00000464439.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs2297810, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-LWK, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000091328 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000464439.2 CYP4B1-007

Summary