Transcript: ENST00000592520.1 DDX52-006

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Source:HGNC Symbol;Acc:20038]

Gene Synonyms

HUSSY19, ROK1

Location

Chromosome 17: 35,973,800-36,003,447 reverse strand.

About this transcript

This transcript has 13 exons, is associated with 12553 variant alleles and maps to 482 oligo probes.

Gene

This transcript is a product of gene ENSG00000141141.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000349699.2	DDX52-001	6359	599aa	ENSP00000268854.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11323	A8MTP9 Q9Y2R4	NM_007010.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394367.3	DDX52-201	3881	491aa	ENSP00000377893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MTP9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488402.1	DDX52-004	3123	112aa	ENSP00000445989.1	Nonsense mediated decay		F5H0R7	-	-
ENST00000591354.1	DDX52-005	2952	115aa	ENSP00000466534.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460080.1	DDX52-003	2027	97aa	ENSP00000443408.1	Nonsense mediated decay		F5H5G9	-	-
ENST00000587431.1	DDX52-007	776	101aa	ENSP00000466128.1	Nonsense mediated decay		K7ELL1	-	-
ENST00000592520.1	DDX52-006	3550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491963.1	DDX52-002	1872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589411.1	DDX52-008	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 3,550 bps,

Version

ENST00000592520.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451930 (version 1)

Annotation Attributes

retained intron CDS [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000592520.1 DDX52-006

Summary