Transcript: ENST00000561801.1 GCSH-005

Description

glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208]

Gene Synonyms

GCE, NKH

Location

Chromosome 16: 81,116,428-81,129,862 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 7647 variant alleles and maps to 328 oligo probes.

Gene

This transcript is a product of gene ENSG00000140905.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315467.3	GCSH-001	1552	173aa	ENSP00000319531.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10933	P23434 Q6QN92	NM_004483.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569885.1	GCSH-006	645	66aa	ENSP00000455579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566566.1	GCSH-004	592	162aa	ENSP00000455019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNV1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564386.1	GCSH-002	972	79aa	ENSP00000457630.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564477.1	GCSH-003	792	50aa	ENSP00000455287.1	Nonsense mediated decay		H3BPF0	-	-
ENST00000561801.1	GCSH-005	400	43aa	ENSP00000457645.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 400 bps, Translation length: 43 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000561801.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432156 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000561801.1 GCSH-005

Summary