Transcript: ENST00000455959.3 SEC11A-002

Description

SEC11 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:17718]

Gene Synonyms

1810012E07Rik, SEC11L1, SPC18, SPCS4A, sid2895

Location

Chromosome 15: 85,212,791-85,259,394 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 20569 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000140612.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268220.7	SEC11A-001	1656	179aa	ENSP00000268220.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45340	B4DUL4 H0YNX5 P67812	NM_014300.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455959.3	SEC11A-002	1223	153aa	ENSP00000413121.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61742	B4DUL4 H0YNX5	NM_001271918.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560266.1	SEC11A-004	1089	164aa	ENSP00000452684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61744	H0YK72 H0YNX5	NM_001271920.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558134.1	SEC11A-008	971	185aa	ENSP00000452697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61743	H0YK83 H0YNX5	NM_001271922.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558217.1	SEC11A-009	882	135aa	ENSP00000453930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNA5	NM_001271919.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558196.1	SEC11A-003	540	106aa	ENSP00000454193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNX5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559729.1	SEC11A-010	451	129aa	ENSP00000452932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKT4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560409.1	SEC11A-005	819	163aa	ENSP00000453997.1	Nonsense mediated decay		H0YNG3 H0YNX5	-	-
ENST00000558924.1	SEC11A-006	3626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559376.1	SEC11A-007	2204	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 1,223 bps, Translation length: 153 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS61742

Version

ENST00000455959.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000418783 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000455959.3 SEC11A-002

Summary