Transcript: ENST00000561331.1 EFTUD1-007

Description

elongation factor Tu GTP binding domain containing 1 [Source:HGNC Symbol;Acc:25789]

Gene Synonyms

EFL1, FAM42A, FLJ13119, HsT19294, RIA1

Location

Chromosome 15: 82,519,807-82,526,115 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 2538 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSG00000140598.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268206.7	EFTUD1-002	3675	1120aa	ENSP00000268206.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42071	H0YNW8 Q7Z2Z2	NM_024580.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359445.3	EFTUD1-001	3470	1069aa	ENSP00000352418.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42070	H0YNW8 Q7Z2Z2	NM_001040610.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558974.1	EFTUD1-005	542	16aa	ENSP00000452990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557844.1	EFTUD1-004	521	30aa	ENSP00000454186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNW8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557939.1	EFTUD1-006	417	139aa	ENSP00000452825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000561389.1	EFTUD1-003	639	58aa	ENSP00000452687.1	Nonsense mediated decay		H0YK75 H0YNW8	-	-
ENST00000561331.1	EFTUD1-007	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561340.1	EFTUD1-010	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560095.1	EFTUD1-009	154	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559429.1	EFTUD1-008	500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 557 bps,

Version

ENST00000561331.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419257 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000561331.1 EFTUD1-007

Summary