Transcript: ENST00000359445.3 EFTUD1-001

Description

elongation factor Tu GTP binding domain containing 1 [Source:HGNC Symbol;Acc:25789]

Gene Synonyms

EFL1, FAM42A, FLJ13119, HsT19294, RIA1

Location

Chromosome 15: 82,422,574-82,555,055 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 28 domains and features, is associated with 54210 variant alleles and maps to 662 oligo probes.

Gene

This transcript is a product of gene ENSG00000140598.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268206.7	EFTUD1-002	3675	1120aa	ENSP00000268206.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42071	H0YNW8 Q7Z2Z2	NM_024580.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359445.3	EFTUD1-001	3470	1069aa	ENSP00000352418.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42070	H0YNW8 Q7Z2Z2	NM_001040610.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558974.1	EFTUD1-005	542	16aa	ENSP00000452990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557844.1	EFTUD1-004	521	30aa	ENSP00000454186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNW8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557939.1	EFTUD1-006	417	139aa	ENSP00000452825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000561389.1	EFTUD1-003	639	58aa	ENSP00000452687.1	Nonsense mediated decay		H0YK75 H0YNW8	-	-
ENST00000561331.1	EFTUD1-007	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561340.1	EFTUD1-010	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560095.1	EFTUD1-009	154	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559429.1	EFTUD1-008	500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 3,470 bps, Translation length: 1,069 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z2Z2

CCDS

This transcript is a member of the Human CCDS set: CCDS42070

Version

ENST00000359445.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419253 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000359445.3 EFTUD1-001

Summary