Transcript: ENST00000508159.1 HERC5-002

Description

HECT and RLD domain containing E3 ubiquitin protein ligase 5 [Source:HGNC Symbol;Acc:24368]

Gene Synonyms

CEB1, CEBP1

Location

About this transcript

This transcript has 17 exons, is annotated with 9 domains and features, is associated with 16192 variant alleles and maps to 437 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264350.3	HERC5-001	3513	1024aa	ENSP00000264350.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3630	E9PBL0 Q9UII4	NM_016323.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508159.1	HERC5-002	2243	662aa	ENSP00000424129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508695.1	HERC5-005	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510223.1	HERC5-004	2925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502913.1	HERC5-003	1949	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,243 bps, Translation length: 662 residues

Version

ENST00000508159.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363268 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.