Transcript: ENST00000264350.3 HERC5-001

Description

HECT and RLD domain containing E3 ubiquitin protein ligase 5 [Source:HGNC Symbol;Acc:24368]

Gene Synonyms

CEB1, CEBP1

Location

About this transcript

This transcript has 23 exons, is annotated with 28 domains and features, is associated with 21108 variant alleles and maps to 659 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264350.3	HERC5-001	3513	1024aa	ENSP00000264350.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3630	E9PBL0 Q9UII4	NM_016323.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508159.1	HERC5-002	2243	662aa	ENSP00000424129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508695.1	HERC5-005	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510223.1	HERC5-004	2925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502913.1	HERC5-003	1949	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 3,513 bps, Translation length: 1,024 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UII4

CCDS

This transcript is a member of the Human CCDS set: CCDS3630

Version

ENST00000264350.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253554 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.