Transcript: ENST00000472553.1 AOX1-006

Description

aldehyde oxidase 1 [Source:HGNC Symbol;Acc:553]

Gene Synonyms

AO, AOH1

Location

Chromosome 2: 201,502,855-201,507,526 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2009 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSG00000138356.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374700.2	AOX1-001	5070	1338aa	ENSP00000363832.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33360	B4DNI5 C9J244 Q06278	NM_001159.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439380.1	AOX1-008	673	190aa	ENSP00000413326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3Q1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000454629.1	AOX1-004	581	151aa	ENSP00000392485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J244	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000260930.6	AOX1-007	580	193aa	ENSP00000260930.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXF7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000485106.1	AOX1-003	3213	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465297.1	AOX1-002	3142	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485965.1	AOX1-005	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472553.1	AOX1-006	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 452 bps,

Version

ENST00000472553.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000335849 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000472553.1 AOX1-006

Summary