Transcript: ENST00000260385.6 RMDN3-001

Description

regulator of microtubule dynamics 3 [Source:HGNC Symbol;Acc:25550]

Gene Synonyms

FAM82A2, FAM82C, FLJ10579, PTPIP51, RMD-3, RMD3, ptpip51

Location

Chromosome 15: 41,028,082-41,048,049 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 10021 variant alleles and maps to 500 oligo probes.

Gene

This transcript is a product of gene ENSG00000137824.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000260385.6	RMDN3-001	3138	470aa	ENSP00000260385.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10063	H0YLG5 Q96TC7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338376.3	RMDN3-003	2251	470aa	ENSP00000342493.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10063	H0YLG5 Q96TC7	NM_018145.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558232.1	RMDN3-012	1033	306aa	ENSP00000453535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560905.1	RMDN3-007	1008	287aa	ENSP00000453199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560460.1	RMDN3-008	931	251aa	ENSP00000453978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558777.1	RMDN3-004	2139	116aa	ENSP00000453357.1	Nonsense mediated decay		H0YLV7	-	-
ENST00000558560.1	RMDN3-010	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558364.1	RMDN3-009	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560588.1	RMDN3-005	2202	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557831.1	RMDN3-006	954	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560779.1	RMDN3-011	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,138 bps, Translation length: 470 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96TC7

CCDS

This transcript is a member of the Human CCDS set: CCDS10063

Version

ENST00000260385.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000252357 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000260385.6 RMDN3-001

Summary