Transcript: ENST00000566429.1 ITGA11-006

Description

integrin, alpha 11 [Source:HGNC Symbol;Acc:6136]

Gene Synonyms

HsT18964, RP11-709B3.2

Location

Chromosome 15: 68,624,289-68,633,181 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4070 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSG00000137809.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315757.7	ITGA11-201	5001	1188aa	ENSP00000327290.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45291	Q9UKX5	NM_001004439.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423218.2	ITGA11-001	5013	1189aa	ENSP00000403392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UKX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562826.1	ITGA11-009	670	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566429.1	ITGA11-006	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569346.1	ITGA11-005	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568677.1	ITGA11-007	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565868.1	ITGA11-008	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 567 bps,

Version

ENST00000566429.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419735 (version 1)

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Transcript: ENST00000566429.1 ITGA11-006

Summary