Transcript: ENST00000423218.2 ITGA11-001

Description

integrin, alpha 11 [Source:HGNC Symbol;Acc:6136]

Gene Synonyms

HsT18964, RP11-709B3.2

Location

Chromosome 15: 68,594,050-68,724,501 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 46 domains and features, is associated with 60591 variant alleles and maps to 997 oligo probes.

Gene

This transcript is a product of gene ENSG00000137809.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315757.7	ITGA11-201	5001	1188aa	ENSP00000327290.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45291	Q9UKX5	NM_001004439.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423218.2	ITGA11-001	5013	1189aa	ENSP00000403392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UKX5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562826.1	ITGA11-009	670	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566429.1	ITGA11-006	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569346.1	ITGA11-005	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568677.1	ITGA11-007	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565868.1	ITGA11-008	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 5,013 bps, Translation length: 1,189 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UKX5

Version

ENST00000423218.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419730 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000423218.2 ITGA11-001

Summary