Transcript: ENST00000260228.2 MMP20-001

Description

matrix metallopeptidase 20 [Source:HGNC Symbol;Acc:7167]

Gene Synonyms

AI2A2, MMP-20, MMP20, MMPL1

Location

About this transcript

This transcript has 10 exons, is annotated with 31 domains and features, is associated with 22310 variant alleles and maps to 422 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000260228.2	MMP20-001	1956	483aa	ENSP00000260228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8318	O60882	NM_004771.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544938.1	MMP20-003	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542305.1	MMP20-002	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,956 bps, Translation length: 483 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60882

CCDS

This transcript is a member of the Human CCDS set: CCDS8318

Version

ENST00000260228.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398012 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.