Transcript: ENST00000524554.1 CAPN11-002

Description

calpain 11 [Source:HGNC Symbol;Acc:1478]

Gene Synonyms

calpain11

Location

Chromosome 6: 44,144,288-44,149,058 forward strand.

About this transcript

This transcript has 7 exons, is associated with 2517 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSG00000137225.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398776.1	CAPN11-001	2728	739aa	ENSP00000381758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47436	Q9UMQ6	NM_007058.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542245.1	CAPN11-201	2728	739aa	ENSP00000441078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX91	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532171.1	CAPN11-005	585	182aa	ENSP00000432420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQZ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526118.1	CAPN11-004	565	40aa	ENSP00000431963.1	Nonsense mediated decay		E9PIX3	-	-
ENST00000524554.1	CAPN11-002	1501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533604.1	CAPN11-003	1051	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,501 bps,

Version

ENST00000524554.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000395715 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000524554.1 CAPN11-002

Summary