Transcript: ENST00000397292.3 PLAA-001

Description

phospholipase A2-activating protein [Source:HGNC Symbol;Acc:9043]

Gene Synonyms

DOA1, FLJ11281, FLJ12699, PLA2P, PLAP

Location

Chromosome 9: 26,904,081-26,947,461 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 27 domains and features, is associated with 21284 variant alleles and maps to 762 oligo probes.

Gene

This transcript is a product of gene ENSG00000137055.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397292.3	PLAA-001	4234	795aa	ENSP00000380460.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35000	Q9Y263	NM_001031689.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520884.1	PLAA-006	2041	609aa	ENSP00000429372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIM3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517642.1	PLAA-005	868	290aa	ENSP00000430447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000523212.1	PLAA-003	730	244aa	ENSP00000428111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487173.1	PLAA-002	625	136aa	ENSP00000430734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000520641.1	PLAA-007	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521968.1	PLAA-004	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 4,234 bps, Translation length: 795 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y263

CCDS

This transcript is a member of the Human CCDS set: CCDS35000

Version

ENST00000397292.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051958 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000397292.3 PLAA-001

Summary