Transcript: ENST00000375147.3 NCBP1-001

Description

nuclear cap binding protein subunit 1, 80kDa [Source:HGNC Symbol;Acc:7658]

Gene Synonyms

CBP80, NCBP, Sto1

Location

About this transcript

This transcript has 23 exons, is annotated with 18 domains and features, is associated with 16936 variant alleles and maps to 885 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375147.3	NCBP1-001	5178	790aa	ENSP00000364289.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6728	Q09161	NM_002486.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375130.2	NCBP1-004	728	155aa	ENSP00000364272.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478100.1	NCBP1-003	892	82aa	ENSP00000433007.1	Nonsense mediated decay		F2Z2T1	-	-
ENST00000491445.1	NCBP1-002	300	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 5,178 bps, Translation length: 790 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q09161

CCDS

This transcript is a member of the Human CCDS set: CCDS6728

Version

ENST00000375147.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000053337 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.