Transcript: ENST00000259239.3 IMP4-001

Description

IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:HGNC Symbol;Acc:30856]

Gene Synonyms

BXDC4, MGC19606

Location

Chromosome 2: 131,099,798-131,104,197 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 2653 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000136718.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000259239.3	IMP4-001	1740	291aa	ENSP00000259239.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2160	B9A008 Q3ZTT3 Q96G21	NM_033416.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409935.1	IMP4-002	958	248aa	ENSP00000386411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428740.1	IMP4-012	924	236aa	ENSP00000389701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9A008 E7ENR5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452955.1	IMP4-014	923	280aa	ENSP00000409371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9A008	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000409649.1	IMP4-010	822	172aa	ENSP00000386716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9A008	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456713.1	IMP4-013	460	76aa	ENSP00000416756.1	Nonsense mediated decay		F8WCN0	-	-
ENST00000460766.1	IMP4-004	2379	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462392.1	IMP4-003	1793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464432.1	IMP4-005	939	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473689.1	IMP4-006	877	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490895.1	IMP4-009	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460100.1	IMP4-017	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470672.1	IMP4-007	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477375.1	IMP4-008	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495606.1	IMP4-011	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462357.1	IMP4-015	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475074.1	IMP4-016	512	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,740 bps, Translation length: 291 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96G21

CCDS

This transcript is a member of the Human CCDS set: CCDS2160

Version

ENST00000259239.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254520 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000259239.3 IMP4-001

Summary