Transcript: ENST00000515221.2 RSAD1-003

Description

radical S-adenosyl methionine domain containing 1 [Source:HGNC Symbol;Acc:25634]

Gene Synonyms

FLJ11164

Location

Chromosome 17: 48,556,221-48,562,258 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 3309 variant alleles and maps to 246 oligo probes.

Gene

This transcript is a product of gene ENSG00000136444.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258955.2	RSAD1-001	2528	442aa	ENSP00000258955.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11569	K7EKD3 Q9HA92	NM_018346.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510554.1	RSAD1-005	554	32aa	ENSP00000465567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKD3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504284.1	RSAD1-004	1064	85aa	ENSP00000425372.1	Nonsense mediated decay		H0Y9X4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515221.2	RSAD1-003	1029	195aa	ENSP00000424558.2	Nonsense mediated decay		B4DMW0	-	-
ENST00000506211.1	RSAD1-006	930	195aa	ENSP00000422893.1	Nonsense mediated decay		H0Y934	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000443328.2	RSAD1-002	1044	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513650.1	RSAD1-008	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509398.1	RSAD1-007	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 1,029 bps, Translation length: 195 residues

Version

ENST00000515221.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000367415 (version 2)

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Transcript: ENST00000515221.2 RSAD1-003

Summary