Transcript: ENST00000557379.1 TTC5-006

Description

tetratricopeptide repeat domain 5 [Source:HGNC Symbol;Acc:19274]

Gene Synonyms

Strap

Location

Chromosome 14: 20,768,496-20,774,112 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2332 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSG00000136319.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258821.3	TTC5-001	4779	440aa	ENSP00000258821.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9546	Q8N0Z6	NM_138376.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423949.2	TTC5-003	1254	385aa	ENSP00000407266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86T04	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553828.1	TTC5-005	748	15aa	ENSP00000451259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000383029.3	TTC5-002	1755	128aa	ENSP00000372496.3	Nonsense mediated decay		H9KV81	-	-
ENST00000556592.1	TTC5-007	875	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554992.1	TTC5-008	621	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554157.1	TTC5-004	5014	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557379.1	TTC5-006	682	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 682 bps,

Version

ENST00000557379.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410355 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000557379.1 TTC5-006

Summary