Transcript: ENST00000258821.3 TTC5-001

Description

tetratricopeptide repeat domain 5 [Source:HGNC Symbol;Acc:19274]

Gene Synonyms

Strap

Location

Chromosome 14: 20,754,387-20,774,153 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 14 domains and features, is associated with 8522 variant alleles and maps to 516 oligo probes.

Gene

This transcript is a product of gene ENSG00000136319.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258821.3	TTC5-001	4779	440aa	ENSP00000258821.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9546	Q8N0Z6	NM_138376.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423949.2	TTC5-003	1254	385aa	ENSP00000407266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86T04	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553828.1	TTC5-005	748	15aa	ENSP00000451259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000383029.3	TTC5-002	1755	128aa	ENSP00000372496.3	Nonsense mediated decay		H9KV81	-	-
ENST00000556592.1	TTC5-007	875	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554992.1	TTC5-008	621	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554157.1	TTC5-004	5014	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557379.1	TTC5-006	682	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,779 bps, Translation length: 440 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N0Z6

CCDS

This transcript is a member of the Human CCDS set: CCDS9546

Version

ENST00000258821.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000073529 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000258821.3 TTC5-001

Summary