Transcript: ENST00000425817.1 SLC19A3-002

Description

solute carrier family 19 (thiamine transporter), member 3 [Source:HGNC Symbol;Acc:16266]

Gene Synonyms

BBGD, THMD2, THTR2

Location

Chromosome 2: 228,549,926-228,582,726 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 23 domains and features, is associated with 14754 variant alleles and maps to 508 oligo probes.

Gene

This transcript is a product of gene ENSG00000135917.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258403.3	SLC19A3-001	3105	496aa	ENSP00000258403.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2468	B8ZZ39 C9IZI1 C9J4J5 Q9BZV2	NM_025243.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541617.1	SLC19A3-201	1954	492aa	ENSP00000445519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2M8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419059.1	SLC19A3-007	852	64aa	ENSP00000398349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ39 C9J4J5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000409287.1	SLC19A3-008	644	92aa	ENSP00000386298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ39 B8ZZW1 C9J4J5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409456.2	SLC19A3-004	594	54aa	ENSP00000387193.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ39	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456524.1	SLC19A3-006	563	132aa	ENSP00000399001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ39 C9IZI1 C9J4J5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425817.1	SLC19A3-002	3517	496aa	ENSP00000397393.1	Nonsense mediated decay	CCDS2468	B8ZZ39 C9IZI1 C9J4J5 Q9BZV2	-	-
ENST00000431622.1	SLC19A3-005	573	56aa	ENSP00000400627.1	Nonsense mediated decay		E7EM61	-	-
ENST00000477697.1	SLC19A3-003	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 3,517 bps, Translation length: 496 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BZV2

CCDS

This transcript is a member of the Human CCDS set: CCDS2468

Version

ENST00000425817.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331609 (version 1)

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Transcript: ENST00000425817.1 SLC19A3-002

Summary