Transcript: ENST00000367694.2 RC3H1-001

Description

ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:29434]

Gene Synonyms

KIAA2025, RNF198, ROQUIN, RP5-1198E17.5, roquin

Location

Chromosome 1: 173,907,549-173,962,210 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 22 domains and features, is associated with 23162 variant alleles and maps to 465 oligo probes.

Gene

This transcript is a product of gene ENSG00000135870.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367696.2	RC3H1-003	11261	1133aa	ENSP00000356669.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30940	B9EGU6 Q5TC82	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000258349.4	RC3H1-201	10988	1133aa	ENSP00000258349.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30940	B9EGU6 Q5TC82	NM_172071.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367694.2	RC3H1-001	3775	1125aa	ENSP00000356667.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TC82	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479099.2	RC3H1-005	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484867.1	RC3H1-002	368	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531594.1	RC3H1-004	303	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,775 bps, Translation length: 1,125 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5TC82

Version

ENST00000367694.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000090737 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000367694.2 RC3H1-001

Summary