Transcript: ENST00000366669.4 COG2-001

Description

component of oligomeric golgi complex 2 [Source:HGNC Symbol;Acc:6546]

Gene Synonyms

LDLC

Location

Chromosome 1: 230,778,238-230,829,728 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 10 domains and features, is associated with 21477 variant alleles and maps to 628 oligo probes.

Gene

This transcript is a product of gene ENSG00000135775.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366669.4	COG2-001	2921	738aa	ENSP00000355629.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1584	B1ALW7 B7Z2Y2 F5H1E5 Q14746	NM_007357.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534989.1	COG2-010	2963	679aa	ENSP00000440349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2Y2 F5H1E5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366668.3	COG2-002	2843	737aa	ENSP00000355628.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44329	Q14746	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535166.1	COG2-201	2784	622aa	ENSP00000445724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1E5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546013.1	COG2-202	1400	427aa	ENSP00000442147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z7N2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468893.2	COG2-009	2784	124aa	ENSP00000476305.1	Nonsense mediated decay		-	-	-
ENST00000490900.1	COG2-007	879	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482012.1	COG2-006	650	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478710.1	COG2-008	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494371.1	COG2-003	7836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473671.1	COG2-004	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,921 bps, Translation length: 738 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14746

CCDS

This transcript is a member of the Human CCDS set: CCDS1584

Version

ENST00000366669.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000092087 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000366669.4 COG2-001

Summary