Transcript: ENST00000413491.1 SMYD5-003

Description

SMYD family member 5 [Source:HGNC Symbol;Acc:16258]

Gene Synonyms

NN8-4AG, RAI15, RRG1, ZMYND23

Location

Chromosome 2: 73,441,350-73,448,341 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 3051 variant alleles and maps to 167 oligo probes.

Gene

This transcript is a product of gene ENSG00000135632.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389501.4	SMYD5-001	2593	418aa	ENSP00000374152.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33221	B4DUT1 Q6GMV2	NM_006062.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443900.1	SMYD5-004	584	138aa	ENSP00000412587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYN9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000258100.4	SMYD5-002	786	70aa	ENSP00000258100.4	Nonsense mediated decay		E2QRN5	-	-
ENST00000413491.1	SMYD5-003	660	81aa	ENSP00000388195.1	Nonsense mediated decay		F8WEJ9	-	-
ENST00000474652.1	SMYD5-005	753	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486518.1	SMYD5-008	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491204.1	SMYD5-006	335	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477038.1	SMYD5-007	359	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 660 bps, Translation length: 81 residues

Version

ENST00000413491.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318303 (version 1)

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Transcript: ENST00000413491.1 SMYD5-003

Summary