Transcript: ENST00000465904.1 MICAL1-003

Description

microtubule associated monooxygenase, calponin and LIM domain containing 1 [Source:HGNC Symbol;Acc:20619]

Gene Synonyms

DKFZp434B1517, FLJ00407, FLJ11937, FLJ21739, MICAL, MICAL-1, NICAL

Location

Chromosome 6: 109,765,268-109,771,456 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 3774 variant alleles and maps to 635 oligo probes.

Gene

This transcript is a product of gene ENSG00000135596.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358807.3	MICAL1-001	3645	1067aa	ENSP00000351664.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5076	H0UI45 Q5TED7 Q8TDZ2	NM_022765.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368952.4	MICAL1-202	3678	1086aa	ENSP00000357948.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69170	H0UI45 Q5TED7 Q8TDZ2	NM_001286613.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358577.3	MICAL1-201	3384	981aa	ENSP00000351385.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55047	H0UI45 Q5TED7 Q8TDZ2	NM_001159291.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431946.1	MICAL1-006	887	244aa	ENSP00000407075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TED7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000433205.1	MICAL1-002	754	252aa	ENSP00000408924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000483856.1	MICAL1-004	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465904.1	MICAL1-003	4381	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000456101.2	MICAL1-005	4112	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 4,381 bps,

Version

ENST00000465904.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041761 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000465904.1 MICAL1-003

Summary